Source Code:

LWFQZip 2

Sample Data:

FASTQ data: SRR1063349.fastq

Reference: NC_017634.1.fasta

Installation:

LW-FQZip 2 is developed in C/C++ and runs on 32/64 bit Linux or Mac OS. A minimum memory of 1GB is suggested for good user experience. To install the program, please download and decompress the source code and then compile it in a GNU environment equipped with GCC compiler using the following commands:

make clean
make

The executable files ‘LWFQZip2’, ‘LWMapping’ and 'FQZip' will be generated in the same directory of the source code. The light-weight mapping model can be used independently with LW-FQZip 2. Make sure the archiving tool tar have been installed and configured correctly before running LW-FQZip 2.LW-FQZip 2 depends on compression algorithms: lpaq9m. High compression mode depends on compression algorithms: zpaq702. To ensure that executable file zpaq has permission to perform. If zpaq did not work correctly, you must recompile it.